The game is told as an autobiography, with an unknown clone recounting the adventures of the 501st Legion. Originally, the Legion was part of the Old Republic, and fights against the Separatists from Geonosis to Utapau. After Emperor Palpatine commands that Order 66 be carried out, the 501st leads a massacre of the Jedi at their temple on Coruscant, coming under the direct supervision of Darth Vader. Feared throughout the galaxy, the 501st becomes known as "Vader's Fist". Under their new leader the 501st executes missions such as a forced regime change on Naboo, the destruction of a new droid army on Mustafar and an attempted clone rebellion on Kamino.
With the Galactic Empire firmly established in the ashes of the Old Republic, the 501st soon grows bored of the endless tedium, drills and inspection associated with maintaining the empire. Finally, much to the 501st relief, a prison break was initiated on the Death Star, and they are set with the mission to recover the stolen plans. When the Death Star's schematics are found, Vader leads the Legion across the galaxy in search of the plans, eventually leading to the boarding of the Tantive IV. Despite capturing the Rebel sympathizer Princess Leia, the plans are still transmitted, and the Death Star is destroyed. The 501st is then pressed into crushing the fledgling Rebel Alliance, leading to the victory at Hoth, where the clone narrator proudly proclaims the Rebellion finished, though the game follows the plot of Episode V, with the Millenium Falcon and Luke Skywalker escaping.
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